curriculum vitae Mark Johan van Raaij
may 1985:
Examination Atheneum B, Mill Hill College, Goirle
1985-1990:
Undergraduate student Chemistry at Leiden University, research project with Dr Barend Kraal and Dr Jan Pieter Abrahams
1991-1992:
Research scientist at the MRC Laboratory of Molecular Biology in Cambridge, UK, working with Dr John E Walker and Dr Andrew Leslie
1992-1996:
Ph.D. student Biology registered at Cambridge University, working at the MRC LMB under the supervision of Dr Walker
1996-2000:
Postdoctoral research at the EMBL Grenoble outstation with Dr Stephen Cusack
2000-2002:
Researcher at Leiden University, with a fellowship from the Dutch Royal Academy of Arts and Sciences (KNAW)
2002-2007:
Ramón y Cajal researcher at the University of Santiago de Compostela
from July 2007:
Cientifico
Titular at the Spanish National Research Council (CSIC), from 1 October 2010 at
the National Centre of Biotechnology (CNB)
Since 2012:
Associate Editor of Virology Journal,
from 2017 Deputy Section Editor
2012-2018: Academic Editor of PLoS One
Since 2017: Section Editor of Acta Crystallographica F
Thesis:
Mark Johan van Raaij (1996) Biochemical and structural
studies on inhibitors of mitochondrial F1-ATPase. PhD
thesis, University of Cambridge, UK.
ISI Web of Science items (times cited as of
April 2018):
1. Abrahams JP,
van Raaij MJ, Ott G, Kraal B, Bosch L (1991) Kirromycin
drastically reduces the affinity of Escherichia coli
elongation factor Tu for aminoacyl-tRNA. Biochemistry 30,
6705-6710 (24).
2. Lutter R, Abrahams JP, van Raaij MJ, Todd RJ, Lundqvist T,
Buchanan SK, Leslie AG, Walker JE (1993) Crystallization of
F1-ATPase from bovine heart mitochondria. J Mol Biol 229,
787-790 (70).
3. Abrahams
JP, Lutter R, Todd RJ, van Raaij MJ, Leslie AG, Walker JE
(1993) Inherent asymmetry of the structure of F1-ATPase from
bovine heart mitochondria at 6.5 Ĺ resolution. EMBO J 12,
1775-1780 (75).
4.
Collinson IR, Runswick MJ, S.K. Buchanan, Fearnley IM, Skehel
JM, van Raaij MJ, van Walraven HS, Griffiths DE, Walker JE
(1994) Fo membrane domain of ATP synthase from bovine heart
mitochondria: purification, subunit composition and
reconstitution with F1-ATPase. Biochemistry 33, 7971-7978 (160).
5.
Collinson IR, van Raaij MJ, Runswick MJ, Fearnley IM, Skehel
JM, Orriss GL, Miroux B, Walker JE (1994) ATP synthase from
bovine heart mitochondria: in vitro assembly of a stalk
complex in the presence of F1-ATPase and in its absence. J Mol
Biol 242, 408-421 (105).
6. Walker JE, Collinson IR, van Raaij MJ, Runswick
MJ (1995) Structural analysis of ATP synthase from bovine
heart mitochondria. Meth Enzymol 260, 163-190 (36).
7. van Raaij MJ, Abrahams JP, Leslie AG, Walker JE (1996) The
structure of bovine F1-ATPase complexed with the antibiotic
inhibitor aurovertin B. Proc Natl Acad Sci USA 93, 6913-6917
(129).
8. Abrahams JP, Buchanan SK, van Raaij MJ, Fearnley IM, Leslie
AG, Walker JE (1996) The structure of bovine F1-ATPase complexed
with the peptide antibiotic efrapeptin. Proc Natl Acad Sci USA
93, 9420-9424 (127).
9. van
Raaij MJ, Orriss GL, Montgomery MG, Runswick MJ, Fearnley IM,
Skehel JM, Walker JE (1996) The ATPase inhibitor protein from
bovine heart mitochondria: the minimal inhibitory sequence.
Biochemistry 3, 15618-15625 (65).
10. Leslie AGW, Abrahams JP, Braig K, Lutter R, Menz
RI, Orriss GL, van Raaij MJ, Walker JE (1999) The structure of
bovine mitochondrial F1-ATPase, an example of rotary catalysis.
Biochem Soc Trans 27, 37-42 (24).
11. van Raaij MJ, Louis N, Chroboczek J, Cusack S (1999)
Structure of the human adenovirus serotype 2 fiber head domain
at 1.5 Ĺ resolution. Virology 262, 333-343 (75).
12.
van Raaij MJ, Mitraki A, Lavigne G, Cusack S (1999) A triple
beta-spiral in the adenovirus fibre shaft reveals a new
structural motif for a fibrous protein. Nature 401, 395-398 (220).
13.
van Raaij MJ, Chouin E, van der Zandt H, Bergelson JM, Cusack
S (2000) Dimeric structure of the coxsackievirus and
adenovirus receptor D1 domain at 1.7 A resolution. Structure
8, 1147-1155 (124).
14. Leissner P, Legrand V, Schlesinger Y, Ali Hadji D,
van Raaij M, Cusack S, Pavirani A, Mehtali M (2001) Influence of
adenovirus fiber mutations on viral encapsidation, infectivity
and in vivo tropism. Gene Ther 8, 49-57 (74).
15. Mitraki A, van Raaij M, Ruigrok R, Cusack S,
Hernandez JF, Luckey M (2001) Structure, Folding and
Assembly of Adenovirus Fibers, in Self-assembling peptide
systems in biology, medicine and engineering (Aggeli A,
Boden N, Zhang S eds, Kluwer Academic Publishers,
Dordrecht NL), pp. 221-234 (0).
16. van Raaij MJ, Chouin E, van der
Zandt H, Bergelson JM, Cusack S (2000) Erratum to: Dimeric
structure of the coxsackievirus and adenovirus receptor D1
domain at 1.7 A resolution. Structure 9, U5 (0).
17. Lortat-Jacob H, Chouin E, Cusack S,
van Raaij MJ (2001) Kinetic analysis of adenovirus fiber binding
to its receptor reveals an avidity mechanism for trimeric
receptor-ligand interactions. J Biol Chem 276, 9009-9015 (59).
18. van Raaij
MJ, Schoehn G, Jaquinod M, Ashman K, Burda MR, Miller S
(2001) Identification and crystallisation of a heat- and
protease-stable fragment of the bacteriophage T4 short tail
fibre. Biol Chem 382, 1049-1055 (17).
19. van Raaij MJ, Schoehn G, Burda MR, Miller S (2001)
Crystal structure of a heat- and protease-stable part of the
bacteriophage T4 short tail fibre. J Mol Biol 314, 1137-1147
(69).
20. Mitraki A, Miller S,
van Raaij MJ (2002) Conformation and folding of novel
beta-structural elements in viral fiber proteins: the triple
beta-spiral and the triple beta-helix. J Struct Biol 137,
236-247 (38).
21. Thomassen E, Gielen G, Schuetz M, Schoehn G, Abrahams
JP, Miller S, van Raaij MJ (2003) The structure of the
receptor-binding domain of the bacteriophage T4 short tail
fibre reveals a knitted trimeric metal-binding fold. J Mol
Biol 331, 361-373 (70).
22. Kostyuchenko VA, Leiman PG, Chipman
PR, Kanamaru S, van Raaij MJ, Arisaka F, Mesyanzhinov VV,
Rossmann MG (2003) Three-dimensional structure of bacteriophage
T4 baseplate. Nat Struct Biol 10, 688-693 (120).
23. van
Well RM, Marinelli L, Altona C, Erkelens K, Siegal G, van Raaij
MJ, Llamas-Saiz AL, Kessler H, Lavecchia A, van Boom JH,
Overhand M (2003) Conformational analysis of furanoid
epsilon-sugar amino acid containing cyclic peptides by NMR
spectroscopy, molecular dynamics simulation and X-ray
crystallography: evidence for a novel turn structure. J Am Chem
Soc 125,
24. van Raaij MJ, Mitraki A (2004)
Beta-structured viral fibres: assembly, structure and
implications for materials design. Curr Opin Solid State Mater
Sci 8, 151-156 (9).
25. Grotenbreg
GM, Timmer MS, Llamas-Saiz AL, Verdoes M, van der Marel GA,
van Raaij MJ, Overkleeft HS, Overhand M (2004) An unusual
reverse turn structure adopted by a furanoid sugar amino
acid incorporated in gramicidin S.
26. van Raaij M (2004) New law does
little to ease research pain in Spain. Nature 428, 365
(1).
27. Papanikolopoulou K, Teixeira S, Belrhali H, Forsyth
VT, Mitraki A, van Raaij MJ (2004) Adenovirus fibre shaft
sequences fold into the native triple beta-spiral fold
when N-terminally fused to the bacteriophage T4 fibritin
foldon trimerisation motif. J Mol Biol 342, 219-227 (22).
28. van Raaij MJ, Hermo Parrado XL, Guardado Calvo P, Fox GC,
Llamas-Saiz AL, Costas C, Martinez-Costas J, Benavente J (2005)
Crystallization of the C-terminal globular domain of avian
reovirus fibre. Acta Cryst F61, 651-654 (5).
29. Guardado Calvo P, Fox GC, Hermo Parrado XL, Llamas-Saiz AL,
Costas C, Martinez-Costas J, Benavente J, van Raaij MJ (2005)
Structure of the carboxy-terminal receptor-binding domain of
avian reovirus fibre sigmaC. J Mol Biol 354, 137-149 (32).
30. Mitraki A, Papanikolopoulou K, van Raaij MJ (2006)
Natural triple beta-stranded fibrous folds. Adv Prot Chem
73, 97-124 (23).
31. Guardado Calvo P, Llamas-Saiz AL,
Langlois P, van Raaij MJ (2006) Crystallization of the
C-terminal head domain of the avian adenovirus CELO long fibre.
Acta Cryst F62, 449-452 (6).
32. Grotenbreg
GM, Buizert AE, Llamas-Saiz AL, Spalburg E, van Hooft PA, de
Neeling AJ, Noort D, van Raaij MJ, van der Marel GA, Overkleeft
HS, Overhand M (2006)
33.
Llamas-Saiz AL, Grotenbreg GM, Overhand M, van Raaij MJ (2007)
Double-stranded helical twisted beta-sheet channels in crystals
of gramicidin S grown in the presence of trifluoracetic and
hydrochloric acid. Acta Cryst D63, 401-407 (33).
34.
Hermo-Parrado XL, Guardado-Calvo P, Llamas-Saiz AL, Fox GC,
Vazquez-Iglesias L, Martinez-Costas J, Benavente J, van Raaij MJ
(2007) Crystallization of the avian reovirus double-stranded
RNA-binding and core protein sigmaA. Acta Cryst F63, 426-429
(4).
35.
Guardado-Calvo P, Llamas-Saiz AL, Fox GC, Langlois P, van Raaij
MJ (2007) Structure of the C-terminal head domain of the fowl
adenovirus type 1 long fiber. J Gen Virol 88, 2407-2416 (17).
36. Walter M,
Fiedler C, Grassl R, Biebl M, Hermo-Parrado XL, Llamas-Saiz AL,
Seckler R, Miller S, van Raaij MJ (2008) Structure of the
receptor-binding protein of bacteriophage det7: a podoviral tail
spike in a myovirus. J Virol 82, 2265-2273 (42).
37.
Guardado-Calvo P, Vazquez-Iglesias L, Martinez-Costas J,
Llamas-Saiz AL, Schoehn G, Fox GC, Hermo-Parrado XL, Benavente
J, van Raaij MJ (2008) Crystal structure of the avian reovirus
inner capsid protein sigmaA. J Virol 82, 11208-11216 (10).
38. Burck S, van
Assema SG, Lastdrager B, Slootweg JC, Ehlers AW, Otero JM,
Dacunha-Marinho B, Llamas-Saiz AL, Overhand M, van Raaij MJ,
Lammertsma K (2009). Bisphosphine-functionalized cyclic
decapeptides based on the natural product Gramicidin S: a
potential scaffold for transition-metal coordination. Chem Eur
J 15, 8134-8145 (12).
39. Guardado-Calvo P, Fox GC, Llamas-Saiz AL, van Raaij
MJ (2009) Crystallographic structure of the alpha-helical triple
coiled-coil domain of avian reovirus S1133 fibre. J Gen Virol
90, 672-677 (17).
40. van der
Knaap M, Engels E, Busscher HJ, Otero JM, Llamas-Saiz AL, van
Raaij MJ, Mars-Groenendijk RH, Noort D, van der Marel GA,
Overkleeft HS, Overhand M (2009). Synthesis and biological
evaluation of asymmetric gramicidin S analogues containing
modified D-phenylalanine residues. Bioorg Med Chem 17, 6318-6328
(9).
41.
Guardado-Calvo P, Llamas-Saiz AL, Fox GC, Glasgow JN, van
Raaij MJ (2009) Crystallization of the head and
galectin-like domains of porcine adenovirus isolate NADC-1
fibre. Acta Cryst F65, 1149-1152 (3).
42. VV Kapoerchan,
E Spalburg, AJ de Neeling, RH
Mars-Groenendijk, D Noort, JM Otero, P
Ferraces-Casais, AL Llamas-Saiz, MJ van
Raaij, J van Doorn, GA van der Marel, HS
Overkleeft, M Overhand (2010) Gramicidin
S Derivatives Containing cis- and
trans-Morpholine Amino Acids (MAAs) as
Turn Mimetics. Chem Eur J 16, 4259-4265
(12).
43. VV Kapoerchan, AD Knijnenburg, M Niamat, E
Spalburg, AJ de Neeling, P Nibbering, RH
Mars-Groenendijk, D Noort, JM Otero, AL
Llamas-Saiz, MJ van Raaij, GA van der Marel, HS
Overkleeft, M Overhand (2010) An adamantyl amino
acid containing GS analog with broad spectrum
antibacterial activity and reduced hemolytic
activity. Chem Eur J 16, 12174-12181 (23).
44.
Prazeres VF, Tizon L, Otero JM, Guardado-Calvo P,
Llamas-Saiz AL, van Raaij MJ, Castedo L, Lamb H,
Hawkins AR, Gonzalez-Bello C (2010) Synthesis and
Biological Evaluation of New Nanomolar Competitive
Inhibitors of Helicobacter pylori Type II
Dehydroquinase. Structural Details of the Role of the
Aromatic Moieties with Essential Residues. J Med Chem
53, 191-200 (13).
45. Afonso Alvarez X,
Cabrera-Poch N, Canda-Sánchez A, Fenollosa C, Pińero
E, van Raaij MJ, Sánchez Cobos E, Segura Pérez I,
Tapiador FJ, Torrado Agrasar AM (2010) Spain's
budget neglects research. Science 327, 1078-1079 (3).
46.
Galan-Bartual S, Garcia-Doval C, Alonso J, Schoehn
G, van Raaij MJ (2010) Two-chaperone assisted
soluble expression and purification of the
bacteriophage T4 long tail fibre protein gp37.
Protein Expr Purif 70, 116-121 (19).
47. P Guardado-Calvo, EM Muńoz, AL Llamas-Saiz,
GC Fox, R Kahn, DT Curiel, JN Glasgow, MJ van
Raaij (2010) Crystallographic structure of
porcine adenovirus 4 fiber head and galectin
domains. J Virol 84, 10558-10568 (15).
48. A Peon, JM Otero, L Tizon, VFV Prazeres,
AL Llamas-Saiz, GC Fox, MJ van Raaij, TJV
Prazeres, JMG Martinho, H Lamb, AR Hawkins, F
Gago, L Castedo, C Gonzalez-Bello (2010)
Understanding the Key Factors that Control the
Inhibition of Type 2 Dehydroquinase by
(2R)-2-Benzyl-3-dehydroquinic acids.
ChemMedChem 5, 1726-1733 (19).
49. SG Bartual, JM Otero, C Garcia-Doval, AL
Llamas-Saiz, R Kahn, GC Fox, MJ van Raaij
(2010) Structure of the bacteriophage T4
long tail fiber needle-shaped
receptor-binding tip. PNAS USA 107,
20287-20292 (55).
50. Leiman PG,
Arisaka F, van Raaij MJ, Kostyuchenko VA,
Aksyuk AA, Kanamaru S, Rossmann MG (2010)
Morphogenesis of the T4 tail and tail
fibers. Virol J 7, 355 (99).
51. van Raaij MJ
(2010) Guest authors: for contributors
only. Nature 428, 765 (1).
52. Kryshtafovych A, Moult J,
Bartual SG, Bazan JF, Berman H, Casteel
DE, Christodoulou E, Everett JK,
Hausmann J, Heidebrecht T, Hills T, Hui
R, Hunt JF, Seetharaman J, Joachimiak A,
Kennedy MA, Kim C, Lingel A, Michalska
K, Montelione GT, Otero JM, Perrakis A,
Pizarro JC, van Raaij MJ, Ramelot TA,
Rousseau F, Tong L, Wernimont AK, Young
J, Schwede T (2011) Target highlights in
CASP9: Experimental target structures
for the critical assessment of
techniques for protein structure
prediction. Proteins 79 S10, 6-20 (14).
53. S Paz, L Tizon, JM Otero, AL
Llamas-Saiz, GC Fox, MJ van Raaij, H
Lamb, AR Hawkins, L Castedo, C
Gonzalez-Bello (2011)
Tetrahydrobenzothiophene derivatives,
inhibitors of an essential enzyme in
Helicobacter pylori survival, by
intramolecular condensation of a
stable ozonide with Lawesson's
reagent. ChemMedChem 6, 266-272 (10).
54. Knijnenburg AD, Tuin
AW, Spalburg E, de Neeling AJ,
Mars-Groenendijk RH, Noort D, Otero
JM, Llamas-Saiz AL, van Raaij MJ,
van der Marel GA, Overkleeft HS,
Overhand M (2011) Exploring the
Conformational and Biological
Versatility of Beta-Turn-Modified
Gramicidin S by Using Sugar Amino
Acid Homologues that Vary in Ring
Size. Chem Eur J 17, 3995-4004 (24)
55. van der Knaap M, Lageveen LT,
Busscher HJ, Mars-Groenendijk R,
Noort D, Otero JM, Llamas-Saiz AL,
van Raaij MJ, van der Marel GA,
Overkleeft HS, Overhand M (2011)
Evaluation of Readily Accessible
Azoles as Mimics of the Aromatic
Ring of D-Phenylalanine in the
Turn Region of Gramicidin S.
ChemMedChem 6, 840-847 (10).
56. Knijnenburg AD, Kapoerchan
VV, Grotenbreg GM, Spalburg E,
de Neeling AJ, Mars-Groenendijk
RH, Noort D, Otero JM,
Llamas-Saiz AL, van Raaij MJ,
Ravensbergen B, Nibbering PH,
van der Marel GA, Overkleeft HS,
Overhand M (2011) Synthesis and
evaluation of strand and turn
modified ring-extended
gramicidin S derivatives. Bioorg
Med Chem 19, 3402-349 (6).
57. L
Tizon, JM Otero, Prazeres VF,
AL Llamas-Saiz, GC Fox, MJ van
Raaij, H Lamb, AR Hawkins,
Ainsa JA, L Castedo, C
Gonzalez-Bello (2011) A Produg
Approach for Improving
Antituberculosis Activity of
Potent Mycobacterium
tuberculosis Type II
Dehydroquinase Inhibitors. J
Med Chem 54, 6063-6084 (18).
58.
Garcia-Doval C, van Raaij MJ
(2012) Crystallization of the
C-terminal domain of the
bacteriophage T7 fibre protein
gp17. Acta Cryst F68, 166-171
(6).
59.
van der Knaap M, Otero JM,
Llamas-Saiz AL, van Raaij MJ,
Lageveen LI, Busscher HJ,
Grotenbreg GM, van der Marel GA,
Overkleeft HS, Overhand M (2012)
Design, synthesis and structural
analysis of mixed
alpha/beta-peptides that adopt
stable cyclic hairpin-like
conformations. Tetrahedron 6,
2391-2400 (6).
60. Garcia-Doval
C, van Raaij MJ (2012) Structure of
the receptor-binding carboxy-terminal
domain of bacteriophage T7 tail
fibers. PNAS USA 109, 9390-9395 (27).
61. Garcia-Doval C, van Raaij MJ (2012)
Crystal structures of the
receptor-binding C-terminal domain of
bacteriophage T4 and T7 tail fibres.
22nd IUBMB Congress/37th FEBS Congress.
FEBS J 279, 444-444 (0).
62. Otero JM,
Noël AJ, Guardado-Calvo P,
Llamas-Saiz AL, Wende W, Schierling B,
Pingoud A, van Raaij MJ (2012) High
resolution structures of the Thermus
thermophilus enoyl-acyl carrier
protein reductase in the apo-form, in
complex with NAD+, and with NAD+ and
triclosan. Acta Cryst F68, 1139-1148
(2).
63.
Kapoerchan VV, Knijnenburg AD, Keizer P,
Spalburg E, de Neeling AJ, Mars-Groenendijk
RH, Noort D, Otero JM, Llamas-Saiz AL, van
Raaij MJ, van der Marel GA, Overkleeft HS,
Overhand M (2012) 'Inverted' analogs of
the antibiotic gramicidin S with an improved
biological profile. Bioorg Med Chem 20,
6059-6062 (4).
64.
Lence E, Tizón L, Otero JM, Peón A, Prazeres
VF, Llamas-Saiz AL, Fox GC, van Raaij MJ, Lamb
H, Hawkins AR, González-Bello C (2013)
Mechanistic Basis of the Inhibition of Type II
Dehydroquinase by (2S)- and
(2R)-2-Benzyl-3-dehydroquinic Acids. ACS Chem
Biol 8, 568-577 (9).
65. Blanco B, Prado
V, Lence E, Otero JM, Garcia-Doval C, van Raaij
MJ, Llamas-Saiz AL, Lamb H, Hawkins AR,
González-Bello C (2013) Mycobacterium
tuberculosis shikimate kinase inhibitors: design
and simulation studies of the catalytic
turnover. J Am Chem Soc 135, 12366-12376
(22).
66. Cuervo A, Pulido-Cid M, Chagoyen M, Arranz
R, González-García VA, Garcia-Doval C, Castón JR,
Valpuesta JM, van Raaij MJ, Martín-Benito J, Carrascosa JL
(2013) Structural characterization of the bacteriophage T7
tail machinery. J Biol Chem 288, 26290-26299 (21).
67. Singh AK, Ballmann MZ, Benko M, Harrach B,
van Raaij MJ (2013) Crystallization of the C-terminal head
domain of the fibre protein from a siadenovirus, turkey
adenovirus 3. Acta Cryst F69, 1135-1139 (5).
68.
Otero JM , van der Knaap M, Llamas-Saiz AL, van Raaij MJ, Amorin
M, Granja JR, Filippov DV, van der Marel GA, Overkleeft HS,
Overhand M (2013) Design, synthesis, and structural analysis of
turn modified cyclo-(alphabeta3alphabeta2alpha)2 peptide
derivatives toward crystalline hexagon-shaped cationic
nanochannel Assemblies. Crystal Growth and Design 13, 4355-4367 (3).
69. Garcia-Doval
C, Luque D, Caston JR, Boulanger P, van Raaij MJ (2013)
Crystallization of the C-terminal domain of the
bacteriophage T5 L-shape fibre. Acta
Cryst F69, 1363-1367 (2).
70.
Singh
AK, Menendez-Conejero R, San Martin C, van Raaij MJ
(2013) Crystallization of the C-terminal domain of the
fibre from snake adenovirus 1, an atadenovirus. Acta
Cryst F69, 1374-1379 (5).
71. Sanz-Gaitero M,
Keary R, Garcia-Doval C, Coffey A, van Raaij MJ (2013)
Crystallization of the CHAP domain of the endolysin from
Staphylococcus aureus bacteriophage K.
Acta Cryst F69, 1393-1396 (4).
72. Kryshtafovych A, Moult J, Bales P, Bazan
JF, Biasini M, Burgin A, Chen C, Cochran FV, Craig TK, Das R,
Fass D, Garcia-Doval C, Herzberg O, Lorimer D, Luecke H, Ma X,
Nelson DC, van Raaij MJ, Rohwer F, Segall A, Seguritan V, Zeth
K, Schwede T (2014) Challenging the state-of-the-art in protein
structure prediction: Highlights of experimental target
structures for the 10th Critical Assessment of Techniques for
Protein Structure Prediction Experiment CASP10. Proteins 82,
Suppl 2, 26-42 (32).
73.
Blanco B, Sedes A, Peon A, Otero JM, van Raaij MJ, Thompson P,
Hawkins AR, Gonzalez-Bello C (2014) Exploring the Water-Binding
Pocket of the Type II Dehydroquinase Enzyme in the
Structure-Based Design of Inhibitors. J Med Chem 57, 3494-3510
(6).
74. Ares P, Garcia-Doval C, Llauro A, Gomez-Herrero J, van Raaij
MJ, De Pablo P (2014) The interplay between the mechanical
properties of bacteriophage fibers and the strength of
virus-host links during early infection stages. Phys Rev E89,
05270 (1).
75.
Granell M, Namura M, Alvira S, Garcia-Doval C, Singh AK,
Gutsche I, van Raaij MJ, Kanamaru S (2014) Crystallization of
the carboxy-terminal region of the bacteriophage T4 proximal
long tail fibre protein gp34. Acta Cryst F70, 970-975 (2).
76. Sanz-Gaitero
M, Keary R, Garcia-Doval C, Coffey A, van Raaij MJ (2014)
Crystal structure of the lytic CHAPK domain of the endolysin
LysK from Staphylococcus aureus bacteriophage K. Virol J 11,
133 (13).
77. Maneiro M,
Peon A, Lence E, Otero JM, van Raaij MJ, Thompson P, Hawkins
AR, Gonzalez-Bello C (2014) Insights into Substrate Binding
and Catalysis in Bacterial Type I Dehydroquinase. Biochem J
462, 415-426 (5).
78.
Pénzes JJ, Menéndez-Conejero R, Condezo GN, Ball I, Papp T,
Doszpoly A, Paradela A, Pérez-Berná AJ, López-Sanz M, Nguyen
TH, van Raaij MJ, Marschang RE, Harrach B, Benkő M, San Martín
C (2014) Molecular characterization of a lizard adenovirus
reveals the first atadenovirus with two fiber genes and the
first adenovirus with either one short or three long fibers
per penton. J Virol 88, 11304-11314 (16).
79. Singh AK, Menéndez-Conejero R, San Martín C, van
Raaij MJ (2014) Crystal structure of the fibre head
domain of the atadenovirus snake adenovirus 1. PLoS One
9, e114373 (8).
80. Tizon L,
Maneiro M, Peon A, Otero JM, Lence E, Poza S, van
Raaij MJ, Thompson P, Hawkins AR, Gonzalez-Bello C
(2015) Irreversible covalent modification of type I
dehydroquinase by a stable Schiff base. Org Biomol
Chem 13, 706-716 (6).
81.
Gonzalez-Garcia VA, Pulido-Cid M,
Garcia-Doval C, Bocanegra R, van Raaij MJ,
Martin-Benito J, Cuervo A, Carrascosa JL
(2015) Conformational changes leading to T7
DNA delivery upon interaction with the
bacterial receptor. J Biol Chem 290,
10038-10044 (7).
82. Nguyen TH, Vidovsky MZ,
Ballmann MZ, Sanz-Gaitero M, Singh AK,
Harrach B, Benko M, van Raaij MJ
(2015) Crystal structure of the fibre
head domain of bovine adenovirus 4, a
ruminant atadenovirus. Virol J 12, 81
(2).
83. Kryshtafovych
A, Moult J, Bales P, Bazan JF,
Biasini M, Burgin A, Chen C,
Cochran FV, Craig TK, Das R, Fass
D, Garcia-Doval C, Herzberg O,
Lorimer D, Luecke H, Ma X, Nelson
DC, van Raaij MJ, Rohwer F, Segall
A, Seguritan V, Zeth K, Schwede T
(2014) Erratum to: Challenging the
state-of-the-art in protein
structure prediction: Highlights
of experimental target structures
for the 10th Critical Assessment
of Techniques for Protein
Structure Prediction Experiment
CASP10. Proteins 83, 1198-1198 (0).
84.
González-Bello
C, Tizón L,
Lence E, Otero
JM, van Raaij
MJ,
Martinez-Guitian
M, Beceiro A,
Thompson P,
Hawkins AR
(2015)
Chemical
Modification
of a
Dehydratase
Enzyme
Involved in
Bacterial
Virulence by
an Ammonium
Derivative:
Evidence of
its Active
Site Covalent
Adduct. J Am
Chem Soc 137,
9333-9343 (3).
85.
Singh AK, Berbis MA, Ballmann MZ, Kilcoyne M, Menendez
M, Nguyen TH, Joshi L, Cańada FJ, Jimenez-Barbero J, Benko M,
Harrach B, van Raaij MJ (2015) Structure and sialyllactose
binding of the carboxy-terminal head domain of the fibre from a
siadenovirus, turkey adenovirus 3. PLoS One 10, e0139339 (4).
86. Garcia-Doval C, Caston JR, Luque D, Granell M, Otero JM,
Llamas-Saiz AL, Renouard M, Boulanger P, van Raaij MJ (2015)
Structure of the receptor-binding carboxy-terminal domain of the
bacteriophage T5 L-shaped tail fibre with and without Its
intra-molecular chaperone. Viruses 7, 6424-6440 (5).
87.
Keary R, Sanz-Gaitero M, van Raaij MJ, OMahony J, Fenton M,
McAuliffe O, Hill C, Ross RP, Coffey A (2015). Characterization
of a bacteriophage-derived murein peptidase for elimination of
antibiotic resistant Staphylococcus aureus. Current Protein Pept
Sci 17, 183-190 (4).
88. Nguyen TH, Ballmann MZ, Do HT, Truong HN, Benko M, Harrach
B, van Raaij MJ (2016) Crystal structure of raptor adenovirus 1
fibre head and role of the beta-hairpin in siadenovirus fibre
head domains. Virol J 13, 106 (0).
89. Nguyen TH, Thomas C, Timson D, van Raaij MJ (2016) Fasciola
hepatica calcium-binding protein FhCaBP2: structure of the
dynein light chain-like domain. Parasitol Res 115, 2879-2886
(3).
90. Kryshtafovych A, Moult J, Baslé A, Burgin A, Craig TK,
Edwards RA, Fass D, Hartmann MD, Korycinski M, Lewis RJ, Lorimer
D, Lupas AN, Newman J, Peat TS, Piepenbrink KH, Prahlad J, van
Raaij MJ, Rohwer F, Segall AM, Seguritan V, Sundberg EJ, Singh
AK, Wilson MA, Schwede T (2016) Some of the most interesting
CASP11 targets through the eyes of their authors. Proteins 84
Suppl 1, 34-50 (8).
91. Perczel A, Atanasov AG, Sklenář V, Nováček J, Papouková V,
Kadeřávek P, ídek L, Kozłowski H, Wątły J, Hecel A, Kołkowska
P, Koča J, Svobodová-Vařeková R, Pravda L, Sehnal D, Horský V,
Geidl S, Enriz RD, Matějka P, Jenitová A, Dendisová M,
Kokaislová A, Weissig V, Olsen M, Coffey A, Ajuebor J, Keary R,
Sanz-Gaitero M, van Raaij MJ, McAuliffe O, Waltenberger B, Mocan
A, mejkal K, Heiss EH, Diederich M, Musioł R, Komrlj J,
Polański J, Jampílek J (2016) The Eighth Central European
Conference "Chemistry towards Biology": Snapshot. Molecules 21,
E1381 (2).
92. Granell M, Namura M, Alvira S, Kanamaru S, van Raaij MJ
(2017) Crystal structure of the carboxy-terminal region of the
bacteriophage T4 proximal long tail fiber protein gp34. Viruses
9, 168 (3).
93. Menéndez-Conejero R, Nguyen TH, Singh AK, Condezo GN,
Marschang RE, van Raaij MJ, San Martín C (2017) Structure of a
reptilian adenovirus reveals a phage tailspike fold stabilizing
a vertebrate virus capsid. Structure 25, 1562-1573 (1).
94. Kryshtafovych A, Albrecht R, Baslé A, Bule P, Caputo AT,
Carvalho AL, Chao KL, Diskin R, Fidelis K, Fontes CMGA,
Fredslund F, Gilbert HJ, Goulding CW, Hartmann MD, Hayes CS,
Herzberg O, Hill JC, Joachimiak A, Kohring GW, Koning RI, Lo
Leggio L, Mangiagalli M, Michalska K, Moult J, Najmudin S,
Nardini M, Nardone V, Ndeh D, Nguyen TH, Pintacuda G, Postel S,
van Raaij MJ, Roversi P, Shimon A, Singh AK, Sundberg EJ, Tars
K, Zitzmann N, Schwede T (2018) Target highlights from the first
post-PSI CASP experiment (CASP12, May-August 2016). Proteins 86
S1, 27-5 (0).
95. Taylor NMI, van Raaij MJ, Leiman PG (2018) Contractile
injection systems of bacteriophages and related systems. Mol
Microbiol 108, 6-15 (0).
H-index: 27
Other
publications:
1. Abrahams
JP, van Raaij MJ, Bosch L, Kraal B, Walters JA, Wijmenga S
(1993) Study by imino proton NMR of Phe-tRNAPhe in complex
with elongation factor Tu and GTP. Spectroscopy 11, 37-44. 2.
van Raaij MJ (1998) Nederlandse onderzoekers dragen bij aan
nobelprijs chemie. Chemisch
Magazine, January issue, p 6.
3.
Abrahams JP, van Raaij MJ (1999) Een enzym als drietakt motor:
ATP-fabricage in de cel. Natuur
en Techniek, June issue, p 26-34.
4. van Raaij MJ (1999)
Structuur virus receptor opgelost. Chemisch2Weekblad,
6 November, p 6.
5. Mitraki A, van Raaij MJ (2005) Folding of beta-structured
fibrous proteins and self-assembling peptides. Meth Mol Biol
300, 125-140.
6. Papanikolopoulou K, van Raaij MJ, Mitraki A (2008)
Creation of hybrid nanorods from sequences of natural
trimeric fibrous proteins using the fibritin trimerization
motif. Meth Mol Biol 474, 15-33.
7. van Raaij MJ, Mitraki A (2013) Natural
Fibrous Proteins: Structural Analysis, Assembly, and
Applications. Proteins in Solution and at Interfaces: Methods
and Applications in Biotechnology and Materials Science (Ruso
JM, Pińeiro A eds, Wiley, ISBN 0470952512), pp. 219-232
8. Llamas-Saiz AL, van Raaij MJ (2013) X-Ray Crystallography
of Biological Macromolecules: Fundamentals and Applications.
Proteins in Solution and at Interfaces: Methods and
Applications in Biotechnology and Materials Science (Ruso JM,
Pińeiro A eds Wiley, ISBN 0470952512), pp. 3-22.
9. Garcia-Doval C, van Raaij MJ (2013) Bacteriophage
receptor recognition and nucleic acid transfer. Subcell
Biochem 68, 489-518.
10. Hyman P, van Raaij MJ (2018)
Bacteriophage T4 long tail fiber domains. Biophys Rev 10,
463-471.
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