curriculum vitae Mark Johan van Raaij

Crystalmounting2

may 1985:   

Examination Atheneum B, Mill Hill College, Goirle

1985-1990:   

Undergraduate student Chemistry at Leiden University, research project with Dr Barend Kraal and Dr Jan Pieter Abrahams

1991-1992:   

Research scientist at the MRC Laboratory of Molecular Biology in Cambridge, UK, working with Dr John E Walker and Dr Andrew Leslie

1992-1996:    

Ph.D. student Biology registered at Cambridge University, working at the MRC LMB under the supervision of Dr Walker

1996-2000:

Postdoctoral research at the EMBL Grenoble outstation with Dr Stephen Cusack

2000-2002:    

Researcher at Leiden University, with a fellowship from the Dutch Royal Academy of Arts and Sciences (KNAW)

2002-2007:   

Ramón y Cajal researcher at the University of Santiago de Compostela

from July 2007:

Cientifico Titular at the Spanish National Research Council (CSIC), from 1 October 2010 at the National Centre of Biotechnology (CNB)

Since 2012: Associate Editor of Virology Journal, from 2017 Deputy Section Editor
2012-2018: Academic Editor of PLoS One
Since 2017: Section Editor of Acta Crystallographica F
actaF

Thesis:
Mark Johan van Raaij (1996) Biochemical and structural studies on inhibitors of mitochondrial F1-ATPase. PhD thesis, University of Cambridge, UK.

ISI Web of Science items
(times cited as of April 2018):
1. Abrahams JP, van Raaij MJ, Ott G, Kraal B, Bosch L (1991) Kirromycin drastically reduces the affinity of Escherichia coli elongation factor Tu for aminoacyl-tRNA. Biochemistry 30, 6705-6710 (24).
2. Lutter R, Abrahams JP, van Raaij MJ, Todd RJ, Lundqvist T, Buchanan SK, Leslie AG, Walker JE (1993) Crystallization of F1-ATPase from bovine heart mitochondria. J Mol Biol 229, 787-790 (70).
3.
Abrahams JP, Lutter R, Todd RJ, van Raaij MJ, Leslie AG, Walker JE (1993) Inherent asymmetry of the structure of F1-ATPase from bovine heart mitochondria at 6.5 Ĺ resolution. EMBO J 12, 1775-1780 (75).
4. Collinson IR, Runswick MJ, S.K. Buchanan, Fearnley IM, Skehel JM, van Raaij MJ, van Walraven HS, Griffiths DE, Walker JE (1994) Fo membrane domain of ATP synthase from bovine heart mitochondria: purification, subunit composition and reconstitution with F1-ATPase. Biochemistry 33, 7971-7978 (160).
5. Collinson IR, van Raaij MJ, Runswick MJ, Fearnley IM, Skehel JM, Orriss GL, Miroux B, Walker JE (1994) ATP synthase from bovine heart mitochondria: in vitro assembly of a stalk complex in the presence of F1-ATPase and in its absence. J Mol Biol 242, 408-421 (105).
6. Walker JE, Collinson IR, van Raaij MJ, Runswick MJ (1995) Structural analysis of ATP synthase from bovine heart mitochondria. Meth Enzymol 260, 163-190 (36).

7. van Raaij MJ, Abrahams JP, Leslie AG, Walker JE (1996) The structure of bovine F1-ATPase complexed with the antibiotic inhibitor aurovertin B. Proc Natl Acad Sci USA 93, 6913-6917 (129).
8. Abrahams JP, Buchanan SK, van Raaij MJ, Fearnley IM, Leslie AG, Walker JE (1996) The structure of bovine F1-ATPase complexed with the peptide antibiotic efrapeptin. Proc Natl Acad Sci USA 93, 9420-9424 (127).
9. van Raaij MJ, Orriss GL, Montgomery MG, Runswick MJ, Fearnley IM, Skehel JM, Walker JE (1996) The ATPase inhibitor protein from bovine heart mitochondria: the minimal inhibitory sequence. Biochemistry 3, 15618-15625 (65).
10. Leslie AGW, Abrahams JP, Braig K, Lutter R, Menz RI, Orriss GL, van Raaij MJ, Walker JE (1999) The structure of bovine mitochondrial F1-ATPase, an example of rotary catalysis. Biochem Soc Trans 27, 37-42 (24).
11. van Raaij MJ, Louis N, Chroboczek J, Cusack S (1999) Structure of the human adenovirus serotype 2 fiber head domain at 1.5 Ĺ resolution. Virology 262, 333-343 (75).
12. van Raaij MJ, Mitraki A, Lavigne G, Cusack S (1999) A triple beta-spiral in the adenovirus fibre shaft reveals a new structural motif for a fibrous protein. Nature 401, 395-398 (220).
13. van Raaij MJ, Chouin E, van der Zandt H, Bergelson JM, Cusack S (2000) Dimeric structure of the coxsackievirus and adenovirus receptor D1 domain at 1.7 A resolution. Structure 8, 1147-1155 (124).
14. Leissner P, Legrand V, Schlesinger Y, Ali Hadji D, van Raaij M, Cusack S, Pavirani A, Mehtali M (2001) Influence of adenovirus fiber mutations on viral encapsidation, infectivity and in vivo tropism. Gene Ther 8, 49-57 (74).
15. Mitraki A, van Raaij M, Ruigrok R, Cusack S, Hernandez JF, Luckey M (2001) Structure, Folding and Assembly of Adenovirus Fibers, in Self-assembling peptide systems in biology, medicine and engineering (Aggeli A, Boden N, Zhang S eds, Kluwer Academic Publishers, Dordrecht NL), pp. 221-234 (0).
16.
van Raaij MJ, Chouin E, van der Zandt H, Bergelson JM, Cusack S (2000) Erratum to: Dimeric structure of the coxsackievirus and adenovirus receptor D1 domain at 1.7 A resolution. Structure 9, U5 (0).
17.
Lortat-Jacob H, Chouin E, Cusack S, van Raaij MJ (2001) Kinetic analysis of adenovirus fiber binding to its receptor reveals an avidity mechanism for trimeric receptor-ligand interactions. J Biol Chem 276, 9009-9015 (59).
18. van Raaij MJ, Schoehn G, Jaquinod M, Ashman K, Burda MR, Miller S (2001) Identification and crystallisation of a heat- and protease-stable fragment of the bacteriophage T4 short tail fibre. Biol Chem 382, 1049-1055 (17).
19. van Raaij MJ, Schoehn G, Burda MR, Miller S (2001) Crystal structure of a heat- and protease-stable part of the bacteriophage T4 short tail fibre. J Mol Biol 314, 1137-1147 (69).
20. Mitraki A, Miller S, van Raaij MJ (2002) Conformation and folding of novel beta-structural elements in viral fiber proteins: the triple beta-spiral and the triple beta-helix. J Struct Biol 137, 236-247 (38).
21. Thomassen E, Gielen G, Schuetz M, Schoehn G, Abrahams JP, Miller S, van Raaij MJ (2003) The structure of the receptor-binding domain of the bacteriophage T4 short tail fibre reveals a knitted trimeric metal-binding fold. J Mol Biol 331, 361-373 (70).
22. Kostyuchenko VA, Leiman PG, Chipman PR, Kanamaru S, van Raaij MJ, Arisaka F, Mesyanzhinov VV, Rossmann MG (2003) Three-dimensional structure of bacteriophage T4 baseplate. Nat Struct Biol 10, 688-693 (120).
23. van Well RM, Marinelli L, Altona C, Erkelens K, Siegal G, van Raaij MJ, Llamas-Saiz AL, Kessler H, Lavecchia A, van Boom JH, Overhand M (2003) Conformational analysis of furanoid epsilon-sugar amino acid containing cyclic peptides by NMR spectroscopy, molecular dynamics simulation and X-ray crystallography: evidence for a novel turn structure. J Am Chem Soc 125, 10822-1082 (53).
24. van Raaij MJ, Mitraki A (2004) Beta-structured viral fibres: assembly, structure and implications for materials design. Curr Opin Solid State Mater Sci 8, 151-156 (9).
25. Grotenbreg GM, Timmer MS, Llamas-Saiz AL, Verdoes M, van der Marel GA, van Raaij MJ, Overkleeft HS, Overhand M (2004) An unusual reverse turn structure adopted by a furanoid sugar amino acid incorporated in gramicidin S. J Am Chem Soc 126, 3444-3446 (87).
26. van Raaij M (2004) New law does little to ease research pain in Spain. Nature 428, 365 (1).
27. Papanikolopoulou K, Teixeira S, Belrhali H, Forsyth VT, Mitraki A, van Raaij MJ (2004) Adenovirus fibre shaft sequences fold into the native triple beta-spiral fold when N-terminally fused to the bacteriophage T4 fibritin foldon trimerisation motif. J Mol Biol 342, 219-227 (22).

28. van Raaij MJ, Hermo Parrado XL, Guardado Calvo P, Fox GC, Llamas-Saiz AL, Costas C, Martinez-Costas J, Benavente J (2005) Crystallization of the C-terminal globular domain of avian reovirus fibre. Acta Cryst F61, 651-654 (5).

29. Guardado Calvo P, Fox GC, Hermo Parrado XL, Llamas-Saiz AL, Costas C, Martinez-Costas J, Benavente J, van Raaij MJ (2005) Structure of the carboxy-terminal receptor-binding domain of avian reovirus fibre sigmaC. J Mol Biol 354, 137-149 (32).

30. Mitraki A, Papanikolopoulou K, van Raaij MJ (2006) Natural triple beta-stranded fibrous folds. Adv Prot Chem 73, 97-124 (23).
31. Guardado Calvo P, Llamas-Saiz AL, Langlois P, van Raaij MJ (2006) Crystallization of the C-terminal head domain of the avian adenovirus CELO long fibre. Acta Cryst F62, 449-452 (6).
32. Grotenbreg GM, Buizert AE, Llamas-Saiz AL, Spalburg E, van Hooft PA, de Neeling AJ, Noort D, van Raaij MJ, van der Marel GA, Overkleeft HS, Overhand M (2006) Beta-turn modified gramicidin S analogues containing arylated sugar amino acids display antimicrobial and hemolytic activity comparable to the natural product. J Am Chem Soc 128, 7559-7565 (44).
33. Llamas-Saiz AL, Grotenbreg GM, Overhand M, van Raaij MJ (2007) Double-stranded helical twisted beta-sheet channels in crystals of gramicidin S grown in the presence of trifluoracetic and hydrochloric acid. Acta Cryst D63, 401-407 (33).
34. Hermo-Parrado XL, Guardado-Calvo P, Llamas-Saiz AL, Fox GC, Vazquez-Iglesias L, Martinez-Costas J, Benavente J, van Raaij MJ (2007) Crystallization of the avian reovirus double-stranded RNA-binding and core protein sigmaA. Acta Cryst F63, 426-429 (4).
35. Guardado-Calvo P, Llamas-Saiz AL, Fox GC, Langlois P, van Raaij MJ (2007) Structure of the C-terminal head domain of the fowl adenovirus type 1 long fiber. J Gen Virol 88, 2407-2416 (17).
36. Walter M, Fiedler C, Grassl R, Biebl M, Hermo-Parrado XL, Llamas-Saiz AL, Seckler R, Miller S, van Raaij MJ (2008) Structure of the receptor-binding protein of bacteriophage det7: a podoviral tail spike in a myovirus. J Virol 82, 2265-2273 (42).
37. Guardado-Calvo P, Vazquez-Iglesias L, Martinez-Costas J, Llamas-Saiz AL, Schoehn G, Fox GC, Hermo-Parrado XL, Benavente J, van Raaij MJ (2008) Crystal structure of the avian reovirus inner capsid protein sigmaA. J Virol 82, 11208-11216 (10).
38. Burck S, van Assema SG, Lastdrager B, Slootweg JC, Ehlers AW, Otero JM, Dacunha-Marinho B, Llamas-Saiz AL, Overhand M, van Raaij MJ, Lammertsma K (2009). Bisphosphine-functionalized cyclic decapeptides based on the natural product Gramicidin S: a potential scaffold for transition-metal coordination. Chem Eur J 15, 8134-8145 (12).
39. Guardado-Calvo P, Fox GC, Llamas-Saiz AL, van Raaij MJ (2009) Crystallographic structure of the alpha-helical triple coiled-coil domain of avian reovirus S1133 fibre. J Gen Virol 90, 672-677 (17).

40. van der Knaap M, Engels E, Busscher HJ, Otero JM, Llamas-Saiz AL, van Raaij MJ, Mars-Groenendijk RH, Noort D, van der Marel GA, Overkleeft HS, Overhand M (2009). Synthesis and biological evaluation of asymmetric gramicidin S analogues containing modified D-phenylalanine residues. Bioorg Med Chem 17, 6318-6328 (9).
41. Guardado-Calvo P, Llamas-Saiz AL, Fox GC, Glasgow JN, van Raaij MJ (2009) Crystallization of the head and galectin-like domains of porcine adenovirus isolate NADC-1 fibre. Acta Cryst F65, 1149-1152 (3).
42. VV Kapoerchan, E Spalburg, AJ de Neeling, RH Mars-Groenendijk, D Noort, JM Otero, P Ferraces-Casais, AL Llamas-Saiz, MJ van Raaij, J van Doorn, GA van der Marel, HS Overkleeft, M Overhand (2010) Gramicidin S Derivatives Containing cis- and trans-Morpholine Amino Acids (MAAs) as Turn Mimetics. Chem Eur J 16, 4259-4265 (12).
43. VV Kapoerchan, AD Knijnenburg, M Niamat, E Spalburg, AJ de Neeling, P Nibbering, RH Mars-Groenendijk, D Noort, JM Otero, AL Llamas-Saiz, MJ van Raaij, GA van der Marel, HS Overkleeft, M Overhand (2010) An adamantyl amino acid containing GS analog with broad spectrum antibacterial activity and reduced hemolytic activity. Chem Eur J 16, 12174-12181 (23).

44. Prazeres VF, Tizon L, Otero JM, Guardado-Calvo P, Llamas-Saiz AL, van Raaij MJ, Castedo L, Lamb H, Hawkins AR, Gonzalez-Bello C (2010) Synthesis and Biological Evaluation of New Nanomolar Competitive Inhibitors of Helicobacter pylori Type II Dehydroquinase. Structural Details of the Role of the Aromatic Moieties with Essential Residues. J Med Chem 53, 191-200 (13).
45. Afonso Alvarez X, Cabrera-Poch N, Canda-Sánchez A, Fenollosa C, Pińero E, van Raaij MJ, Sánchez Cobos E, Segura Pérez I, Tapiador FJ, Torrado Agrasar AM (2010) Spain's budget neglects research. Science 327, 1078-1079 (3).
46. Galan-Bartual S, Garcia-Doval C, Alonso J, Schoehn G, van Raaij MJ (2010) Two-chaperone assisted soluble expression and purification of the bacteriophage T4 long tail fibre protein gp37. Protein Expr Purif 70, 116-121 (19).
47. P Guardado-Calvo, EM Muńoz, AL Llamas-Saiz, GC Fox, R Kahn, DT Curiel, JN Glasgow, MJ van Raaij (2010) Crystallographic structure of porcine adenovirus 4 fiber head and galectin domains. J Virol 84, 10558-10568 (15).

48. A Peon, JM Otero, L Tizon, VFV Prazeres, AL Llamas-Saiz, GC Fox, MJ van Raaij, TJV Prazeres, JMG Martinho, H Lamb, AR Hawkins, F Gago, L Castedo, C Gonzalez-Bello (2010) Understanding the Key Factors that Control the Inhibition of Type 2 Dehydroquinase by (2R)-2-Benzyl-3-dehydroquinic acids. ChemMedChem 5, 1726-1733 (19).
49. SG Bartual, JM Otero, C Garcia-Doval, AL Llamas-Saiz, R Kahn, GC Fox, MJ van Raaij (2010) Structure of the bacteriophage T4 long tail fiber needle-shaped receptor-binding tip. PNAS USA 107, 20287-20292 (55).

50. Leiman PG, Arisaka F, van Raaij MJ, Kostyuchenko VA, Aksyuk AA, Kanamaru S, Rossmann MG (2010) Morphogenesis of the T4 tail and tail fibers. Virol J 7, 355 (99).
51. van Raaij MJ (2010) Guest authors: for contributors only. Nature 428, 765 (1).
52. Kryshtafovych A, Moult J, Bartual SG, Bazan JF, Berman H, Casteel DE, Christodoulou E, Everett JK, Hausmann J, Heidebrecht T, Hills T, Hui R, Hunt JF, Seetharaman J, Joachimiak A, Kennedy MA, Kim C, Lingel A, Michalska K, Montelione GT, Otero JM, Perrakis A, Pizarro JC, van Raaij MJ, Ramelot TA, Rousseau F, Tong L, Wernimont AK, Young J, Schwede T (2011) Target highlights in CASP9: Experimental target structures for the critical assessment of techniques for protein structure prediction. Proteins 79 S10, 6-20 (14).
53. S Paz, L Tizon, JM Otero, AL Llamas-Saiz, GC Fox, MJ van Raaij, H Lamb, AR Hawkins, L Castedo, C Gonzalez-Bello (2011) Tetrahydrobenzothiophene derivatives, inhibitors of an essential enzyme in Helicobacter pylori survival, by intramolecular condensation of a stable ozonide with Lawesson's reagent. ChemMedChem 6, 266-272 (10).
54. Knijnenburg AD, Tuin AW, Spalburg E, de Neeling AJ, Mars-Groenendijk RH, Noort D, Otero JM, Llamas-Saiz AL, van Raaij MJ, van der Marel GA, Overkleeft HS, Overhand M (2011) Exploring the Conformational and Biological Versatility of Beta-Turn-Modified Gramicidin S by Using Sugar Amino Acid Homologues that Vary in Ring Size. Chem Eur J 17, 3995-4004 (24)
55. van der Knaap M, Lageveen LT, Busscher HJ, Mars-Groenendijk R, Noort D, Otero JM, Llamas-Saiz AL, van Raaij MJ, van der Marel GA, Overkleeft HS, Overhand M (2011) Evaluation of Readily Accessible Azoles as Mimics of the Aromatic Ring of D-Phenylalanine in the Turn Region of Gramicidin S. ChemMedChem 6, 840-847 (10).

56. Knijnenburg AD, Kapoerchan VV, Grotenbreg GM, Spalburg E, de Neeling AJ, Mars-Groenendijk RH, Noort D, Otero JM, Llamas-Saiz AL, van Raaij MJ, Ravensbergen B, Nibbering PH, van der Marel GA, Overkleeft HS, Overhand M (2011) Synthesis and evaluation of strand and turn modified ring-extended gramicidin S derivatives. Bioorg Med Chem 19, 3402-349 (6).

57. L Tizon, JM Otero, Prazeres VF, AL Llamas-Saiz, GC Fox, MJ van Raaij, H Lamb, AR Hawkins, Ainsa JA, L Castedo, C Gonzalez-Bello (2011) A Produg Approach for Improving Antituberculosis Activity of Potent Mycobacterium tuberculosis Type II Dehydroquinase Inhibitors. J Med Chem 54, 6063-6084 (18).
58. Garcia-Doval C, van Raaij MJ (2012) Crystallization of the C-terminal domain of the bacteriophage T7 fibre protein gp17. Acta Cryst F68, 166-171 (6).
59. van der Knaap M, Otero JM, Llamas-Saiz AL, van Raaij MJ, Lageveen LI, Busscher HJ, Grotenbreg GM, van der Marel GA, Overkleeft HS, Overhand M (2012) Design, synthesis and structural analysis of mixed alpha/beta-peptides that adopt stable cyclic hairpin-like conformations. Tetrahedron 6, 2391-2400 (6).
60. Garcia-Doval C, van Raaij MJ (2012) Structure of the receptor-binding carboxy-terminal domain of bacteriophage T7 tail fibers. PNAS USA 109, 9390-9395 (27).
61. Garcia-Doval C, van Raaij MJ (2012) Crystal structures of the receptor-binding C-terminal domain of bacteriophage T4 and T7 tail fibres. 22nd IUBMB Congress/37th FEBS Congress. FEBS J 279, 444-444 (0).

62. Otero JM, Noël AJ, Guardado-Calvo P, Llamas-Saiz AL, Wende W, Schierling B, Pingoud A, van Raaij MJ (2012) High resolution structures of the Thermus thermophilus enoyl-acyl carrier protein reductase in the apo-form, in complex with NAD+, and with NAD+ and triclosan. Acta Cryst F68, 1139-1148 (2).
63. Kapoerchan VV, Knijnenburg AD, Keizer P, Spalburg E, de Neeling AJ, Mars-Groenendijk RH, Noort D, Otero JM, Llamas-Saiz AL, van Raaij MJ, van der Marel GA, Overkleeft HS, Overhand M (2012) 'Inverted' analogs of the antibiotic gramicidin S with an improved biological profile. Bioorg Med Chem 20, 6059-6062 (4).
64. Lence E, Tizón L, Otero JM, Peón A, Prazeres VF, Llamas-Saiz AL, Fox GC, van Raaij MJ, Lamb H, Hawkins AR, González-Bello C (2013) Mechanistic Basis of the Inhibition of Type II Dehydroquinase by (2S)- and (2R)-2-Benzyl-3-dehydroquinic Acids. ACS Chem Biol 8, 568-577 (9).
65. Blanco B, Prado V, Lence E, Otero JM, Garcia-Doval C, van Raaij MJ, Llamas-Saiz AL, Lamb H, Hawkins AR, González-Bello C (2013) Mycobacterium tuberculosis shikimate kinase inhibitors: design and simulation studies of the catalytic turnover. J Am Chem Soc 135, 12366-12376 (22).
66. Cuervo A, Pulido-Cid M, Chagoyen M, Arranz R, González-García VA, Garcia-Doval C, Castón JR, Valpuesta JM, van Raaij MJ, Martín-Benito J, Carrascosa JL (2013) Structural characterization of the bacteriophage T7 tail machinery. J Biol Chem 288, 26290-26299 (21).
67. Singh AK, Ballmann MZ, Benko M, Harrach B, van Raaij MJ (2013) Crystallization of the C-terminal head domain of the fibre protein from a siadenovirus, turkey adenovirus 3. Acta Cryst F69, 1135-1139 (5).
68. Otero JM , van der Knaap M, Llamas-Saiz AL, van Raaij MJ, Amorin M, Granja JR, Filippov DV, van der Marel GA, Overkleeft HS, Overhand M (2013) Design, synthesis, and structural analysis of turn modified cyclo-(alphabeta3alphabeta2alpha)2 peptide derivatives toward crystalline hexagon-shaped cationic nanochannel Assemblies. Crystal Growth and Design 13, 4355-4367 (3).
69.
Garcia-Doval C, Luque D, Caston JR, Boulanger P, van Raaij MJ (2013) Crystallization of the C-terminal domain of the bacteriophage T5 L-shape fibre. Acta Cryst F69, 1363-1367 (2).
70. Singh AK, Menendez-Conejero R, San Martin C, van Raaij MJ (2013) Crystallization of the C-terminal domain of the fibre from snake adenovirus 1, an atadenovirus. Acta Cryst F69, 1374-1379 (5).
71. Sanz-Gaitero M, Keary R, Garcia-Doval C, Coffey A, van Raaij MJ (2013) Crystallization of the CHAP domain of the endolysin from Staphylococcus aureus bacteriophage K. Acta Cryst F69, 1393-1396 (4).
72. Kryshtafovych A, Moult J, Bales P, Bazan JF, Biasini M, Burgin A, Chen C, Cochran FV, Craig TK, Das R, Fass D, Garcia-Doval C, Herzberg O, Lorimer D, Luecke H, Ma X, Nelson DC, van Raaij MJ, Rohwer F, Segall A, Seguritan V, Zeth K, Schwede T (2014) Challenging the state-of-the-art in protein structure prediction: Highlights of experimental target structures for the 10th Critical Assessment of Techniques for Protein Structure Prediction Experiment CASP10. Proteins 82, Suppl 2, 26-42 (32).
73. Blanco B, Sedes A, Peon A, Otero JM, van Raaij MJ, Thompson P, Hawkins AR, Gonzalez-Bello C (2014) Exploring the Water-Binding Pocket of the Type II Dehydroquinase Enzyme in the Structure-Based Design of Inhibitors. J Med Chem 57, 3494-3510 (6).
74. Ares P, Garcia-Doval C, Llauro A, Gomez-Herrero J, van Raaij MJ, De Pablo P (2014) The interplay between the mechanical properties of bacteriophage fibers and the strength of virus-host links during early infection stages. Phys Rev E89, 05270 (1).
75. Granell M, Namura M, Alvira S, Garcia-Doval C, Singh AK, Gutsche I, van Raaij MJ, Kanamaru S (2014) Crystallization of the carboxy-terminal region of the bacteriophage T4 proximal long tail fibre protein gp34. Acta Cryst F70, 970-975 (2).
76. Sanz-Gaitero M, Keary R, Garcia-Doval C, Coffey A, van Raaij MJ (2014) Crystal structure of the lytic CHAPK domain of the endolysin LysK from Staphylococcus aureus bacteriophage K. Virol J 11, 133 (13).
77. Maneiro M, Peon A, Lence E, Otero JM, van Raaij MJ, Thompson P, Hawkins AR, Gonzalez-Bello C (2014) Insights into Substrate Binding and Catalysis in Bacterial Type I Dehydroquinase. Biochem J 462, 415-426 (5).
78. Pénzes JJ, Menéndez-Conejero R, Condezo GN, Ball I, Papp T, Doszpoly A, Paradela A, Pérez-Berná AJ, López-Sanz M, Nguyen TH, van Raaij MJ, Marschang RE, Harrach B, Benkő M, San Martín C (2014) Molecular characterization of a lizard adenovirus reveals the first atadenovirus with two fiber genes and the first adenovirus with either one short or three long fibers per penton. J Virol 88, 11304-11314 (16).
79. Singh AK, Menéndez-Conejero R, San Martín C, van Raaij MJ (2014) Crystal structure of the fibre head domain of the atadenovirus snake adenovirus 1. PLoS One 9, e114373 (8).

80. Tizon L, Maneiro M, Peon A, Otero JM, Lence E, Poza S, van Raaij MJ, Thompson P, Hawkins AR, Gonzalez-Bello C (2015) Irreversible covalent modification of type I dehydroquinase by a stable Schiff base. Org Biomol Chem 13, 706-716 (6).
81. Gonzalez-Garcia VA, Pulido-Cid M, Garcia-Doval C, Bocanegra R, van Raaij MJ, Martin-Benito J, Cuervo A, Carrascosa JL (2015) Conformational changes leading to T7 DNA delivery upon interaction with the bacterial receptor. J Biol Chem 290, 10038-10044 (7).
82. Nguyen TH, Vidovsky MZ, Ballmann MZ, Sanz-Gaitero M, Singh AK, Harrach B, Benko M, van Raaij MJ (2015) Crystal structure of the fibre head domain of bovine adenovirus 4, a ruminant atadenovirus. Virol J 12, 81 (2).

83. Kryshtafovych A, Moult J, Bales P, Bazan JF, Biasini M, Burgin A, Chen C, Cochran FV, Craig TK, Das R, Fass D, Garcia-Doval C, Herzberg O, Lorimer D, Luecke H, Ma X, Nelson DC, van Raaij MJ, Rohwer F, Segall A, Seguritan V, Zeth K, Schwede T (2014) Erratum to: Challenging the state-of-the-art in protein structure prediction: Highlights of experimental target structures for the 10th Critical Assessment of Techniques for Protein Structure Prediction Experiment CASP10. Proteins 83, 1198-1198 (0).
84. González-Bello C, Tizón L, Lence E, Otero JM, van Raaij MJ, Martinez-Guitian M, Beceiro A, Thompson P, Hawkins AR (2015) Chemical Modification of a Dehydratase Enzyme Involved in Bacterial Virulence by an Ammonium Derivative: Evidence of its Active Site Covalent Adduct. J Am Chem Soc 137, 9333-9343 (3).
85.
Singh AK, Berbis MA, Ballmann MZ, Kilcoyne M, Menendez M, Nguyen TH, Joshi L, Cańada FJ, Jimenez-Barbero J, Benko M, Harrach B, van Raaij MJ (2015) Structure and sialyllactose binding of the carboxy-terminal head domain of the fibre from a siadenovirus, turkey adenovirus 3. PLoS One 10, e0139339 (4).
86. Garcia-Doval C, Caston JR, Luque D, Granell M, Otero JM, Llamas-Saiz AL, Renouard M, Boulanger P, van Raaij MJ (2015) Structure of the receptor-binding carboxy-terminal domain of the bacteriophage T5 L-shaped tail fibre with and without Its intra-molecular chaperone. Viruses 7, 6424-6440 (5).
87
. Keary R, Sanz-Gaitero M, van Raaij MJ, O’Mahony J, Fenton M, McAuliffe O, Hill C, Ross RP, Coffey A (2015). Characterization of a bacteriophage-derived murein peptidase for elimination of antibiotic resistant Staphylococcus aureus. Current Protein Pept Sci 17, 183-190 (4).
88. Nguyen TH, Ballmann MZ, Do HT, Truong HN, Benko M, Harrach B, van Raaij MJ (2016) Crystal structure of raptor adenovirus 1 fibre head and role of the beta-hairpin in siadenovirus fibre head domains. Virol J 13, 106 (0).
89. Nguyen TH, Thomas C, Timson D, van Raaij MJ (2016) Fasciola hepatica calcium-binding protein FhCaBP2: structure of the dynein light chain-like domain. Parasitol Res 115, 2879-2886 (3).
90. Kryshtafovych A, Moult J, Baslé A, Burgin A, Craig TK, Edwards RA, Fass D, Hartmann MD, Korycinski M, Lewis RJ, Lorimer D, Lupas AN, Newman J, Peat TS, Piepenbrink KH, Prahlad J, van Raaij MJ, Rohwer F, Segall AM, Seguritan V, Sundberg EJ, Singh AK, Wilson MA, Schwede T (2016) Some of the most interesting CASP11 targets through the eyes of their authors. Proteins 84 Suppl 1, 34-50 (8).
91. Perczel A, Atanasov AG, Sklenář V, Nováček J, Papoušková V, Kadeřávek P, Žídek L, Kozłowski H, Wątły J, Hecel A, Kołkowska P, Koča J, Svobodová-Vařeková R, Pravda L, Sehnal D, Horský V, Geidl S, Enriz RD, Matějka P, Jeništová A, Dendisová M, Kokaislová A, Weissig V, Olsen M, Coffey A, Ajuebor J, Keary R, Sanz-Gaitero M, van Raaij MJ, McAuliffe O, Waltenberger B, Mocan A, Šmejkal K, Heiss EH, Diederich M, Musioł R, Košmrlj J, Polański J, Jampílek J (2016) The Eighth Central European Conference "Chemistry towards Biology": Snapshot. Molecules 21, E1381 (2).
92. Granell M, Namura M, Alvira S, Kanamaru S, van Raaij MJ (2017) Crystal structure of the carboxy-terminal region of the bacteriophage T4 proximal long tail fiber protein gp34. Viruses 9, 168 (3).
93. Menéndez-Conejero R, Nguyen TH, Singh AK, Condezo GN, Marschang RE, van Raaij MJ, San Martín C (2017) Structure of a reptilian adenovirus reveals a phage tailspike fold stabilizing a vertebrate virus capsid. Structure 25, 1562-1573 (1).
94. Kryshtafovych A, Albrecht R, Baslé A, Bule P, Caputo AT, Carvalho AL, Chao KL, Diskin R, Fidelis K, Fontes CMGA, Fredslund F, Gilbert HJ, Goulding CW, Hartmann MD, Hayes CS, Herzberg O, Hill JC, Joachimiak A, Kohring GW, Koning RI, Lo Leggio L, Mangiagalli M, Michalska K, Moult J, Najmudin S, Nardini M, Nardone V, Ndeh D, Nguyen TH, Pintacuda G, Postel S, van Raaij MJ, Roversi P, Shimon A, Singh AK, Sundberg EJ, Tars K, Zitzmann N, Schwede T
(2018) Target highlights from the first post-PSI CASP experiment (CASP12, May-August 2016). Proteins 86 S1, 27-5 (0).
95. Taylor NMI, van Raaij MJ, Leiman PG (2018) Contractile injection systems of bacteriophages and related systems. Mol Microbiol 108, 6-15 (0).

H-index: 27

Other publications:
1. Abrahams JP, van Raaij MJ, Bosch L, Kraal B, Walters JA, Wijmenga S (1993) Study by imino proton NMR of Phe-tRNAPhe in complex with elongation factor Tu and GTP. Spectroscopy 11, 37-44. 2. van Raaij MJ (1998) Nederlandse onderzoekers dragen bij aan nobelprijs chemie. Chemisch Magazine, January issue, p 6.
3. Abrahams JP, van Raaij MJ (1999) Een enzym als drietakt motor: ATP-fabricage in de cel. Natuur en Techniek, June issue, p 26-34.
4. van Raaij MJ (1999) Structuur virus receptor opgelost. Chemisch2Weekblad, 6 November, p 6.
5. Mitraki A, van Raaij MJ (2005) Folding of beta-structured fibrous proteins and self-assembling peptides. Meth Mol Biol 300, 125-140.

6. Papanikolopoulou K, van Raaij MJ, Mitraki A (2008) Creation of hybrid nanorods from sequences of natural trimeric fibrous proteins using the fibritin trimerization motif. Meth Mol Biol 474, 15-33.

7. van Raaij MJ, Mitraki A
(2013) Natural Fibrous Proteins: Structural Analysis, Assembly, and Applications. Proteins in Solution and at Interfaces: Methods and Applications in Biotechnology and Materials Science (Ruso JM, Pińeiro A eds, Wiley, ISBN 0470952512), pp. 219-232
8. Llamas-Saiz AL, van Raaij MJ (2013) X-Ray Crystallography of Biological Macromolecules: Fundamentals and Applications. Proteins in Solution and at Interfaces: Methods and Applications in Biotechnology and Materials Science (Ruso JM, Pińeiro A eds Wiley, ISBN 0470952512), pp. 3-22.
9. Garcia-Doval C, van Raaij MJ (2013) Bacteriophage receptor recognition and nucleic acid transfer. Subcell Biochem 68, 489-518.
10. Hyman P, van Raaij MJ
(2018) Bacteriophage T4 long tail fiber domains. Biophys Rev 10, 463-471.

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